PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi02g07200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family YABBY
Protein Properties Length: 208aa    MW: 23345.5 Da    PI: 8.6823
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi02g07200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY91.42.2e-285218420170
            YABBY  20 tilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvp 113
                        + vsvP++sl+++vtvrCGhC++llsvn+  + q  + ++       ++++++  +ee + k+  +++++ ++  +     e  ++e pr+p
  Vradi02g07200.1  52 YPIHVSVPYNSLLTIVTVRCGHCANLLSVNMGASLQPFPPQDP------QSQKQHISFEEPSSKELGSSSSKCNKIAPF----EAVEHEPPRIP 135
                      4578***************************999999998885......233444445555555444444444444444....45677889999 PP

            YABBY 114 pvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      p irP ekr rvPsaynrfi    q       d + r   s   + WahfP+ihfgl
  Vradi02g07200.1 136 P-IRPTEKRHRVPSAYNRFINKSFQ-----VSDFAGRK--SKGLRLWAHFPHIHFGL 184
                      8.9*****************99887.....46888887..78889**********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046902.4E-3147184IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MSGSERCCYY MDVFNVPHHT TLSPAGHCTH TLKMLHGVLW KHFSWECESF TYPIHVSVPY  60
NSLLTIVTVR CGHCANLLSV NMGASLQPFP PQDPQSQKQH ISFEEPSSKE LGSSSSKCNK  120
IAPFEAVEHE PPRIPPIRPT EKRHRVPSAY NRFINKSFQV SDFAGRKSKG LRLWAHFPHI  180
HFGLKLDGNS QGKLEQGEGG EKTNGFY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0905711e-115BT090571.1 Soybean clone JCVI-FLGm-4H4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235782.11e-79uncharacterized protein LOC100500026
SwissprotQ9XFB01e-47YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A0S3SC149e-84A0A0S3SC14_PHAAN; Uncharacterized protein
STRINGGLYMA06G46560.13e-79(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-30YABBY family protein